Detailed information of SNP:
|
SNP ID:
sf0816274549(Gbrowse)
Chromosome: chr08 Position: 16274549 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 64.61% | 35.39% |
| All Indica | 796 | 96.48% | 3.52% |
| All Japonica | 493 | 12.78% | 87.22% |
| Aus | 65 | 84.62% | 15.38% |
| Indica I | 373 | 95.44% | 4.56% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 91 | 60.44% | 39.56% |
| Japonica Intermediate | 67 | 7.46% | 92.54% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816274549 | A->G | INTERGENIC | None |