Detailed information of SNP:
|
SNP ID:
sf0816275441(Gbrowse)
Chromosome: chr08 Position: 16275441 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 65.46% | 34.54% |
| All Indica | 791 | 96.97% | 3.03% |
| All Japonica | 494 | 13.56% | 86.44% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 371 | 96.23% | 3.77% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 208 | 96.63% | 3.37% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 91 | 61.54% | 38.46% |
| Japonica Intermediate | 68 | 11.76% | 88.24% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816275441 | G->A | INTERGENIC | None |