Detailed information of SNP:
|
SNP ID:
sf0816276384(Gbrowse)
Chromosome: chr08 Position: 16276384 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1394 | 54.66% | 45.34% |
| All Indica | 779 | 84.72% | 15.28% |
| All Japonica | 494 | 6.68% | 93.32% |
| Aus | 66 | 81.82% | 18.18% |
| Indica I | 362 | 77.62% | 22.38% |
| Indica II | 210 | 94.76% | 5.24% |
| Indica Intermediate | 207 | 86.96% | 13.04% |
| Temperate Japonica | 334 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 34.04% | 65.96% |
| Japonica Intermediate | 66 | 1.52% | 98.48% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 36.59% | 63.41% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816276384 | T->C | LOC_Os08g26790(LOC_Os08g26790.1) | Non-Synonymous SNP |