Detailed information of SNP:
|
SNP ID:
sf0816277018(Gbrowse)
Chromosome: chr08 Position: 16277018 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1381 | 55.61% | 44.39% |
| All Indica | 779 | 84.08% | 15.92% |
| All Japonica | 485 | 8.66% | 91.34% |
| Aus | 65 | 86.15% | 13.85% |
| Indica I | 361 | 77.84% | 22.16% |
| Indica II | 211 | 93.84% | 6.16% |
| Indica Intermediate | 207 | 85.02% | 14.98% |
| Temperate Japonica | 334 | 0.60% | 99.40% |
| Tropical Japonica | 84 | 42.86% | 57.14% |
| Japonica Intermediate | 67 | 5.97% | 94.03% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 38 | 39.47% | 60.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816277018 | T->C | INTERGENIC | None |