Detailed information of SNP:
|
SNP ID:
sf0816289390(Gbrowse)
Chromosome: chr08 Position: 16289390 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1366 | 92.39% | 7.61% |
| All Indica | 769 | 89.08% | 10.92% |
| All Japonica | 483 | 96.89% | 3.11% |
| Aus | 61 | 93.44% | 6.56% |
| Indica I | 357 | 94.40% | 5.60% |
| Indica II | 208 | 89.90% | 10.10% |
| Indica Intermediate | 204 | 78.92% | 21.08% |
| Temperate Japonica | 326 | 99.39% | 0.61% |
| Tropical Japonica | 91 | 90.11% | 9.89% |
| Japonica Intermediate | 66 | 93.94% | 6.06% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816289390 | A->G | INTERGENIC | None |