Detailed information of SNP:
|
SNP ID:
sf0816335738(Gbrowse)
Chromosome: chr08 Position: 16335738 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 86.46% | 13.54% |
| All Indica | 798 | 98.75% | 1.25% |
| All Japonica | 497 | 72.23% | 27.77% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 62.09% | 37.91% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816335738 | T->C | LOC_Os08g26860(LOC_Os08g26860.1) | INTRON |