Detailed information of SNP:
|
SNP ID:
sf0816360403(Gbrowse)
Chromosome: chr08 Position: 16360403 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 57.72% | 42.28% |
| All Indica | 799 | 92.12% | 7.88% |
| All Japonica | 497 | 4.43% | 95.57% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 28.57% | 71.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816360403 | G->A | INTERGENIC | None |