Detailed information of SNP:
|
SNP ID:
sf0816371889(Gbrowse)
Chromosome: chr08 Position: 16371889 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 95.28% | 4.72% |
| All Indica | 799 | 98.50% | 1.50% |
| All Japonica | 496 | 94.96% | 5.04% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 93 | 76.34% | 23.66% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816371889 | C->T | INTERGENIC | None |