Detailed information of SNP:
|
SNP ID:
sf0816376457(Gbrowse)
Chromosome: chr08 Position: 16376457 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 55.48% | 44.52% |
| All Indica | 793 | 23.96% | 76.04% |
| All Japonica | 492 | 97.97% | 2.03% |
| Aus | 65 | 92.31% | 7.69% |
| Indica I | 369 | 31.17% | 68.83% |
| Indica II | 213 | 14.55% | 85.45% |
| Indica Intermediate | 211 | 20.85% | 79.15% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 89 | 92.13% | 7.87% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816376457 | C->T | INTERGENIC | None |