Detailed information of SNP:
|
SNP ID:
sf0816376934(Gbrowse)
Chromosome: chr08 Position: 16376934 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 55.82% | 44.18% |
| All Indica | 796 | 24.12% | 75.88% |
| All Japonica | 491 | 98.17% | 1.83% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 31.45% | 68.55% |
| Indica II | 213 | 14.55% | 85.45% |
| Indica Intermediate | 211 | 20.85% | 79.15% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 88 | 93.18% | 6.82% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816376934 | A->T | INTERGENIC | None |