Detailed information of SNP:
|
SNP ID:
sf0816442196(Gbrowse)
Chromosome: chr08 Position: 16442196 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 59.84% | 40.16% |
| All Indica | 798 | 91.23% | 8.77% |
| All Japonica | 497 | 10.46% | 89.54% |
| Aus | 66 | 65.15% | 34.85% |
| Indica I | 374 | 88.50% | 11.50% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 8.66% | 91.34% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816442196 | A->G | INTERGENIC | None |