Detailed information of SNP:
|
SNP ID:
sf0816444903(Gbrowse)
Chromosome: chr08 Position: 16444903 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 85.41% | 14.59% |
| All Indica | 794 | 85.89% | 14.11% |
| All Japonica | 497 | 93.96% | 6.04% |
| Aus | 65 | 10.77% | 89.23% |
| Indica I | 371 | 76.28% | 23.72% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 210 | 92.38% | 7.62% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 73.40% | 26.60% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816444903 | G->C | INTERGENIC | None |