Detailed information of SNP:
|
SNP ID:
sf0816474080(Gbrowse)
Chromosome: chr08 Position: 16474080 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1388 | 92.94% | 7.06% |
| All Indica | 769 | 89.99% | 10.01% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 66 | 77.27% | 22.73% |
| Indica I | 367 | 91.28% | 8.72% |
| Indica II | 197 | 86.29% | 13.71% |
| Indica Intermediate | 205 | 91.22% | 8.78% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816474080 | T->C | LOC_Os08g26970(LOC_Os08g26970.1) | Non-Synonymous SNP |