Detailed information of SNP:
|
SNP ID:
sf0816509018(Gbrowse)
Chromosome: chr08 Position: 16509018 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 82.00% | 18.00% |
| All Indica | 798 | 80.70% | 19.30% |
| All Japonica | 497 | 91.15% | 8.85% |
| Aus | 66 | 34.85% | 65.15% |
| Indica I | 375 | 72.53% | 27.47% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 210 | 82.38% | 17.62% |
| Temperate Japonica | 335 | 91.94% | 8.06% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816509018 | G->C | INTERGENIC | None |