Detailed information of SNP:
|
SNP ID:
sf0816543371(Gbrowse)
Chromosome: chr08 Position: 16543371 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 57.45% | 42.55% |
| All Indica | 798 | 91.73% | 8.27% |
| All Japonica | 497 | 4.23% | 95.77% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 374 | 94.65% | 5.35% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 26.83% | 73.17% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816543371 | G->A | INTERGENIC | None |