Detailed information of SNP:
|
SNP ID:
sf0816649502(Gbrowse)
Chromosome: chr08 Position: 16649502 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1370 | 93.43% | 6.57% |
| All Indica | 763 | 89.38% | 10.62% |
| All Japonica | 493 | 99.19% | 0.81% |
| Aus | 58 | 91.38% | 8.62% |
| Indica I | 351 | 88.89% | 11.11% |
| Indica II | 210 | 92.38% | 7.62% |
| Indica Intermediate | 202 | 87.13% | 12.87% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 90 | 95.56% | 4.44% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816649502 | G->A | LOC_Os08g27270(LOC_Os08g27270.1) | Synonymous |