Detailed information of SNP:
|
SNP ID:
sf0816649505(Gbrowse)
Chromosome: chr08 Position: 16649505 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1362 | 92.51% | 7.49% |
| All Indica | 757 | 87.85% | 12.15% |
| All Japonica | 493 | 98.99% | 1.01% |
| Aus | 58 | 91.38% | 8.62% |
| Indica I | 348 | 87.36% | 12.64% |
| Indica II | 209 | 91.39% | 8.61% |
| Indica Intermediate | 200 | 85.00% | 15.00% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 90 | 94.44% | 5.56% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816649505 | C->T | LOC_Os08g27270(LOC_Os08g27270.1) | Synonymous |