Detailed information of SNP:
|
SNP ID:
sf0816667446(Gbrowse)
Chromosome: chr08 Position: 16667446 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1281 | 95.24% | 4.76% |
| All Indica | 663 | 90.80% | 9.20% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 297 | 83.50% | 16.50% |
| Indica II | 194 | 98.45% | 1.55% |
| Indica Intermediate | 172 | 94.77% | 5.23% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816667446 | C->T | INTERGENIC | None |