Detailed information of SNP:
|
SNP ID:
sf0816678307(Gbrowse)
Chromosome: chr08 Position: 16678307 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 83.66% | 16.34% |
| All Indica | 799 | 99.00% | 1.00% |
| All Japonica | 492 | 59.96% | 40.04% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 331 | 63.44% | 36.56% |
| Tropical Japonica | 93 | 46.24% | 53.76% |
| Japonica Intermediate | 68 | 61.76% | 38.24% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816678307 | C->A | LOC_Os08g27320(LOC_Os08g27320.1) | INTRON |