Detailed information of SNP:
|
SNP ID:
sf0816706534(Gbrowse)
Chromosome: chr08 Position: 16706534 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 57.83% | 42.17% |
| All Indica | 799 | 84.61% | 15.39% |
| All Japonica | 496 | 10.89% | 89.11% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 85.07% | 14.93% |
| Indica II | 213 | 87.32% | 12.68% |
| Indica Intermediate | 211 | 81.04% | 18.96% |
| Temperate Japonica | 335 | 5.97% | 94.03% |
| Tropical Japonica | 93 | 29.03% | 70.97% |
| Japonica Intermediate | 68 | 10.29% | 89.71% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816706534 | A->T | LOC_Os08g27360(LOC_Os08g27360.1) | INTRON |