Detailed information of SNP:
|
SNP ID:
sf0816721697(Gbrowse)
Chromosome: chr08 Position: 16721697 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 84.82% | 15.18% |
| All Indica | 799 | 98.75% | 1.25% |
| All Japonica | 489 | 62.17% | 37.83% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 330 | 63.94% | 36.06% |
| Tropical Japonica | 92 | 50.00% | 50.00% |
| Japonica Intermediate | 67 | 70.15% | 29.85% |
| Group VI/Aromatic | 13 | 46.15% | 53.85% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816721697 | G->A | INTERGENIC | None |