Detailed information of SNP:
|
SNP ID:
sf0816747388(Gbrowse)
Chromosome: chr08 Position: 16747388 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1384 | 58.31% | 41.69% |
| All Indica | 766 | 92.69% | 7.31% |
| All Japonica | 495 | 6.26% | 93.74% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 358 | 96.09% | 3.91% |
| Indica II | 202 | 89.11% | 10.89% |
| Indica Intermediate | 206 | 90.29% | 9.71% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 93 | 25.81% | 74.19% |
| Japonica Intermediate | 67 | 4.48% | 95.52% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816747388 | C->A | LOC_Os08g27440(LOC_Os08g27440.1) | INTRON |