Detailed information of SNP:
|
SNP ID:
sf0816782044(Gbrowse)
Chromosome: chr08 Position: 16782044 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 87.79% | 12.21% |
| All Indica | 797 | 82.31% | 17.69% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 375 | 72.27% | 27.73% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 209 | 88.52% | 11.48% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816782044 | G->A | LOC_Os08g27500(LOC_Os08g27500.1) | Non-Synonymous SNP |