Detailed information of SNP:
|
SNP ID:
sf0816857594(Gbrowse)
Chromosome: chr08 Position: 16857594 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 70.03% | 29.97% |
| All Indica | 778 | 49.74% | 50.26% |
| All Japonica | 497 | 98.79% | 1.21% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 359 | 67.97% | 32.03% |
| Indica II | 212 | 23.58% | 76.42% |
| Indica Intermediate | 207 | 44.93% | 55.07% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816857594 | G->T | INTERGENIC | None |