Detailed information of SNP:
|
SNP ID:
sf0816857734(Gbrowse)
Chromosome: chr08 Position: 16857734 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 72.93% | 27.07% |
| All Indica | 791 | 54.49% | 45.51% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 373 | 72.39% | 27.61% |
| Indica II | 210 | 26.19% | 73.81% |
| Indica Intermediate | 208 | 50.96% | 49.04% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816857734 | A->G | INTERGENIC | None |