Detailed information of SNP:
|
SNP ID:
sf0816857762(Gbrowse)
Chromosome: chr08 Position: 16857762 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 72.64% | 27.36% |
| All Indica | 791 | 53.98% | 46.02% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 372 | 71.77% | 28.23% |
| Indica II | 210 | 26.19% | 73.81% |
| Indica Intermediate | 209 | 50.24% | 49.76% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816857762 | C->T | INTERGENIC | None |