Detailed information of SNP:
|
SNP ID:
sf0816899988(Gbrowse)
Chromosome: chr08 Position: 16899988 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1380 | 91.01% | 8.99% |
| All Indica | 784 | 97.19% | 2.81% |
| All Japonica | 473 | 80.13% | 19.87% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 97.32% | 2.68% |
| Indica II | 207 | 97.58% | 2.42% |
| Indica Intermediate | 204 | 96.57% | 3.43% |
| Temperate Japonica | 319 | 87.15% | 12.85% |
| Tropical Japonica | 91 | 51.65% | 48.35% |
| Japonica Intermediate | 63 | 85.71% | 14.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816899988 | T->C | LOC_Os08g27730(LOC_Os08g27730.1) | INTRON |