Detailed information of SNP:
|
SNP ID:
sf0816924180(Gbrowse)
Chromosome: chr08 Position: 16924180 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1392 | 81.47% | 18.53% |
| All Indica | 777 | 70.27% | 29.73% |
| All Japonica | 495 | 95.15% | 4.85% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 362 | 61.60% | 38.40% |
| Indica II | 209 | 89.00% | 11.00% |
| Indica Intermediate | 206 | 66.50% | 33.50% |
| Temperate Japonica | 334 | 97.31% | 2.69% |
| Tropical Japonica | 93 | 84.95% | 15.05% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816924180 | C->G | INTERGENIC | None |