Detailed information of SNP:
|
SNP ID:
sf0816927291(Gbrowse)
Chromosome: chr08 Position: 16927291 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1396 | 95.27% | 4.73% |
| All Indica | 779 | 92.04% | 7.96% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 368 | 90.49% | 9.51% |
| Indica II | 206 | 93.20% | 6.80% |
| Indica Intermediate | 205 | 93.66% | 6.34% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816927291 | G->T | LOC_Os08g27790(LOC_Os08g27790.1) | INTRON |
| sf0816927291 | G->T | LOC_Os08g27790(LOC_Os08g27790.1) | SNPs that disrupt splice sites |