Detailed information of SNP:
|
SNP ID:
sf0816928604(Gbrowse)
Chromosome: chr08 Position: 16928604 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1322 | 69.36% | 30.64% |
| All Indica | 734 | 58.45% | 41.55% |
| All Japonica | 476 | 91.39% | 8.61% |
| Aus | 63 | 20.63% | 79.37% |
| Indica I | 341 | 46.04% | 53.96% |
| Indica II | 198 | 78.28% | 21.72% |
| Indica Intermediate | 195 | 60.00% | 40.00% |
| Temperate Japonica | 325 | 93.54% | 6.46% |
| Tropical Japonica | 84 | 78.57% | 21.43% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 37 | 75.68% | 24.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816928604 | T->C | INTERGENIC | None |