Detailed information of SNP:
|
SNP ID:
sf0816929404(Gbrowse)
Chromosome: chr08 Position: 16929404 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1346 | 52.38% | 47.62% |
| All Indica | 770 | 73.38% | 26.62% |
| All Japonica | 460 | 16.74% | 83.26% |
| Aus | 66 | 45.45% | 54.55% |
| Indica I | 367 | 64.31% | 35.69% |
| Indica II | 199 | 84.42% | 15.58% |
| Indica Intermediate | 204 | 78.92% | 21.08% |
| Temperate Japonica | 317 | 9.78% | 90.22% |
| Tropical Japonica | 81 | 46.91% | 53.09% |
| Japonica Intermediate | 62 | 12.90% | 87.10% |
| Group VI/Aromatic | 11 | 81.82% | 18.18% |
| Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0816929404 | T->C | LOC_Os08g27800(LOC_Os08g27800.1) | Non-Synonymous SNP |