Detailed information of SNP:
|
SNP ID:
sf0817015459(Gbrowse)
Chromosome: chr08 Position: 17015459 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1344 | 95.68% | 4.32% |
| All Indica | 729 | 96.16% | 3.84% |
| All Japonica | 493 | 94.93% | 5.07% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 353 | 98.58% | 1.42% |
| Indica II | 182 | 92.31% | 7.69% |
| Indica Intermediate | 194 | 95.36% | 4.64% |
| Temperate Japonica | 331 | 95.47% | 4.53% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817015459 | G->A | INTERGENIC | None |