Detailed information of SNP:
|
SNP ID:
sf0817024680(Gbrowse)
Chromosome: chr08 Position: 17024680 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1372 | 97.38% | 2.62% |
| All Indica | 755 | 95.76% | 4.24% |
| All Japonica | 494 | 99.19% | 0.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 344 | 95.35% | 4.65% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 198 | 93.94% | 6.06% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 95.60% | 4.40% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817024680 | C->T | LOC_Os08g27940(LOC_Os08g27940.1) | INTRON |