Detailed information of SNP:
|
SNP ID:
sf0817027047(Gbrowse)
Chromosome: chr08 Position: 17027047 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 81.95% | 18.05% |
| All Indica | 799 | 98.87% | 1.13% |
| All Japonica | 497 | 58.15% | 41.85% |
| Aus | 66 | 78.79% | 21.21% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 64.78% | 35.22% |
| Tropical Japonica | 94 | 47.87% | 52.13% |
| Japonica Intermediate | 68 | 39.71% | 60.29% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817027047 | G->A | LOC_Os08g27940(LOC_Os08g27940.1) | Non-Synonymous SNP |