Detailed information of SNP:
|
SNP ID:
sf0817038780(Gbrowse)
Chromosome: chr08 Position: 17038780 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 55.86% | 44.14% |
| All Indica | 796 | 56.03% | 43.97% |
| All Japonica | 497 | 47.69% | 52.31% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 75.40% | 24.60% |
| Indica II | 213 | 23.47% | 76.53% |
| Indica Intermediate | 209 | 54.55% | 45.45% |
| Temperate Japonica | 335 | 36.42% | 63.58% |
| Tropical Japonica | 94 | 75.53% | 24.47% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817038780 | A->G | INTERGENIC | None |