Detailed information of SNP:
|
SNP ID:
sf0817056537(Gbrowse)
Chromosome: chr08 Position: 17056537 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 97.60% | 2.40% |
| All Indica | 797 | 98.49% | 1.51% |
| All Japonica | 494 | 95.75% | 4.25% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 333 | 95.50% | 4.50% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817056537 | C->T | INTERGENIC | None |