Detailed information of SNP:
|
SNP ID:
sf0817077356(Gbrowse)
Chromosome: chr08 Position: 17077356 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 77.64% | 22.36% |
| All Indica | 785 | 61.66% | 38.34% |
| All Japonica | 496 | 99.19% | 0.81% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 371 | 80.59% | 19.41% |
| Indica II | 205 | 27.32% | 72.68% |
| Indica Intermediate | 209 | 61.72% | 38.28% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817077356 | C->T | LOC_Os08g28040(LOC_Os08g28040.1) | Non-Synonymous SNP |