Detailed information of SNP:
|
SNP ID:
sf0817077996(Gbrowse)
Chromosome: chr08 Position: 17077996 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 93.28% | 6.72% |
| All Indica | 795 | 96.23% | 3.77% |
| All Japonica | 496 | 90.32% | 9.68% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 212 | 96.70% | 3.30% |
| Indica Intermediate | 208 | 95.19% | 4.81% |
| Temperate Japonica | 334 | 91.62% | 8.38% |
| Tropical Japonica | 94 | 87.23% | 12.77% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817077996 | G->A | LOC_Os08g28040(LOC_Os08g28040.1) | Non-Synonymous SNP |