Detailed information of SNP:
|
SNP ID:
sf0817102001(Gbrowse)
Chromosome: chr08 Position: 17102001 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1215 | 91.44% | 8.56% |
| All Indica | 647 | 88.72% | 11.28% |
| All Japonica | 475 | 97.05% | 2.95% |
| Aus | 45 | 82.22% | 17.78% |
| Indica I | 300 | 86.00% | 14.00% |
| Indica II | 184 | 91.85% | 8.15% |
| Indica Intermediate | 163 | 90.18% | 9.82% |
| Temperate Japonica | 325 | 98.77% | 1.23% |
| Tropical Japonica | 86 | 88.37% | 11.63% |
| Japonica Intermediate | 64 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 35 | 77.14% | 22.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817102001 | G->A | LOC_Os08g28060(LOC_Os08g28060.1) | INTRON |