Detailed information of SNP:
|
SNP ID:
sf0817108415(Gbrowse)
Chromosome: chr08 Position: 17108415 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 58.05% | 41.95% |
| All Indica | 797 | 56.96% | 43.04% |
| All Japonica | 496 | 56.05% | 43.95% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 76.27% | 23.73% |
| Indica II | 212 | 22.64% | 77.36% |
| Indica Intermediate | 210 | 57.14% | 42.86% |
| Temperate Japonica | 335 | 62.99% | 37.01% |
| Tropical Japonica | 94 | 45.74% | 54.26% |
| Japonica Intermediate | 67 | 35.82% | 64.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817108415 | T->G | LOC_Os08g28070(LOC_Os08g28070.1) | INTRON |