Detailed information of SNP:
|
SNP ID:
sf0817108546(Gbrowse)
Chromosome: chr08 Position: 17108546 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1259 | 75.06% | 24.94% |
| All Indica | 694 | 83.29% | 16.71% |
| All Japonica | 457 | 62.80% | 37.20% |
| Aus | 61 | 88.52% | 11.48% |
| Indica I | 342 | 89.18% | 10.82% |
| Indica II | 170 | 75.88% | 24.12% |
| Indica Intermediate | 182 | 79.12% | 20.88% |
| Temperate Japonica | 317 | 68.45% | 31.55% |
| Tropical Japonica | 79 | 55.70% | 44.30% |
| Japonica Intermediate | 61 | 42.62% | 57.38% |
| Group VI/Aromatic | 11 | 18.18% | 81.82% |
| Intermediate | 36 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817108546 | T->C | LOC_Os08g28070(LOC_Os08g28070.1) | INTRON |