Detailed information of SNP:
|
SNP ID:
sf0817154894(Gbrowse)
Chromosome: chr08 Position: 17154894 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 67.26% | 32.74% |
| All Indica | 793 | 48.30% | 51.70% |
| All Japonica | 497 | 91.95% | 8.05% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 26.93% | 73.07% |
| Indica II | 211 | 88.63% | 11.37% |
| Indica Intermediate | 207 | 45.89% | 54.11% |
| Temperate Japonica | 335 | 92.54% | 7.46% |
| Tropical Japonica | 94 | 85.11% | 14.89% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817154894 | G->A | INTERGENIC | None |