Detailed information of SNP:
|
SNP ID:
sf0817161572(Gbrowse)
Chromosome: chr08 Position: 17161572 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 82.24% | 17.76% |
| All Indica | 799 | 98.62% | 1.38% |
| All Japonica | 497 | 57.14% | 42.86% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 62.39% | 37.61% |
| Tropical Japonica | 94 | 48.94% | 51.06% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817161572 | C->T | LOC_Os08g28130(LOC_Os08g28130.1) | INTRON |