Detailed information of SNP:
|
SNP ID:
sf0817219145(Gbrowse)
Chromosome: chr08 Position: 17219145 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1385 | 82.60% | 17.40% |
| All Indica | 783 | 97.96% | 2.04% |
| All Japonica | 492 | 55.69% | 44.31% |
| Aus | 58 | 96.55% | 3.45% |
| Indica I | 365 | 98.63% | 1.37% |
| Indica II | 211 | 96.21% | 3.79% |
| Indica Intermediate | 207 | 98.55% | 1.45% |
| Temperate Japonica | 333 | 44.74% | 55.26% |
| Tropical Japonica | 93 | 81.72% | 18.28% |
| Japonica Intermediate | 66 | 74.24% | 25.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 86.84% | 13.16% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817219145 | A->G | INTERGENIC | None |