Detailed information of SNP:
|
SNP ID:
sf0817245485(Gbrowse)
Chromosome: chr08 Position: 17245485 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 78.01% | 21.99% |
| All Indica | 790 | 62.03% | 37.97% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 371 | 49.33% | 50.67% |
| Indica II | 211 | 74.88% | 25.12% |
| Indica Intermediate | 208 | 71.63% | 28.37% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817245485 | T->A | LOC_Os08g28260(LOC_Os08g28260.1) | Synonymous |