Detailed information of SNP:
|
SNP ID:
sf0817246168(Gbrowse)
Chromosome: chr08 Position: 17246168 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1390 | 62.59% | 37.41% |
| All Indica | 774 | 60.85% | 39.15% |
| All Japonica | 496 | 64.52% | 35.48% |
| Aus | 64 | 85.94% | 14.06% |
| Indica I | 370 | 54.86% | 45.14% |
| Indica II | 200 | 65.50% | 34.50% |
| Indica Intermediate | 204 | 67.16% | 32.84% |
| Temperate Japonica | 335 | 64.78% | 35.22% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 67 | 40.30% | 59.70% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817246168 | C->T | LOC_Os08g28260(LOC_Os08g28260.1) | Synonymous |