Detailed information of SNP:
|
SNP ID:
sf0817246936(Gbrowse)
Chromosome: chr08 Position: 17246936 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 86.98% | 13.02% |
| All Indica | 787 | 87.42% | 12.58% |
| All Japonica | 496 | 92.54% | 7.46% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 366 | 90.98% | 9.02% |
| Indica II | 212 | 85.85% | 14.15% |
| Indica Intermediate | 209 | 82.78% | 17.22% |
| Temperate Japonica | 334 | 94.01% | 5.99% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817246936 | T->A | INTERGENIC | None |