Detailed information of SNP:
|
SNP ID:
sf0817295964(Gbrowse)
Chromosome: chr08 Position: 17295964 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1328 | 92.17% | 7.83% |
| All Indica | 798 | 98.87% | 1.13% |
| All Japonica | 413 | 80.15% | 19.85% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 282 | 82.27% | 17.73% |
| Tropical Japonica | 81 | 77.78% | 22.22% |
| Japonica Intermediate | 50 | 72.00% | 28.00% |
| Group VI/Aromatic | 11 | 18.18% | 81.82% |
| Intermediate | 39 | 89.74% | 10.26% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817295964 | C->G | LOC_Os08g28350(LOC_Os08g28350.1) | INTRON |