Detailed information of SNP:
|
SNP ID:
sf0817308894(Gbrowse)
Chromosome: chr08 Position: 17308894 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 63.65% | 36.35% |
| All Indica | 796 | 95.85% | 4.15% |
| All Japonica | 496 | 9.48% | 90.52% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 96.51% | 3.49% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 8.66% | 91.34% |
| Tropical Japonica | 93 | 15.05% | 84.95% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817308894 | T->C | INTERGENIC | None |