Detailed information of SNP:
|
SNP ID:
sf0817325393(Gbrowse)
Chromosome: chr08 Position: 17325393 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 64.40% | 35.60% |
| All Indica | 796 | 98.12% | 1.88% |
| All Japonica | 496 | 7.86% | 92.14% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 373 | 98.39% | 1.61% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 334 | 9.28% | 90.72% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817325393 | T->C | INTERGENIC | None |